Include HPCBio if analysis services are also needed.ġ0x Visium is compatible with fresh frozen OCT embedded tissues and 10x FFPE Visium is compatible with FFPE tissue. If you're writing a grant, please send an email to CMtO and DNA Services, including the funding agency and title of the grant, to get quotes and letters of support. You can explore more about the Visium technology here and find support documentation, software, and data sets for Visium Fresh Frozen (FF) gene expression here and for FFPE Visium here. HPCBio: Bioinformatics processing / Space Ranger / downstream analysis:īelow, you'll find a host of details and links that you can refer to throughout this process and/or use in your grant submission. Mayandi Sivaguru, Ph.D - Director ( ) and Kate Janssen ( )ĭNA services facility: library preparation and sequencing:Īlvaro Hernandez ( ) and Chris Wright ( ).Contact Information:ĬMtO: Project setup and quoting, tissue permeability testing, sectioning and Visium protocol: Please see our 10x Single Cell page for single cell applications, or return to our main Sample Submission page for all other sample types.ġ0x Visium spatial transcriptomics projects are processed in the Carver Biotechnology Center (CBC) Cytometry and Microscopy to Omics (CMtO) Core, with final library construction and sequencing performed in the DNA Services lab. The information below is for 10x Visium Spatial Transcriptomics projects only. Our facility offers a full range of services for library construction and sequencing with the NovaSeq 6000, MiSeq, Oxford Nanopore GridION and the 10x Genomics Chromium.
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